Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cpaFType II secretion system protein E. (467 aa)    
Predicted Functional Partners:
AGA_610
Type II secretion system F domain.
 
 
 0.997
tadC
Type II secretion system F domain.
 
 
 0.993
cpaE
Putative pilus assembly protein.
 
 
 0.991
cpaC
Type II and III secretion system protein; pilus_MshL: pilus (MSHA type) biogenesis protein MshL; Belongs to the bacterial secretin family.
 
 0.987
cpaB
pilus_cpaB: Flp pilus assembly protein CpaB.
 
 
 0.984
AGA_607
Putative pilus assembly protein; Pilus biogenesis CpaD-related.
  
 
 0.966
AGA_612
Hypothetical protein; Tetratricopeptide TPR-1.
 
 
 0.903
AGA_613
Hypothetical protein; TadE-like.
  
  
 0.865
trbG
P-type conjugative transfer protein TrbG.
    
 0.774
trbI
Type IV secretion system protein VirB10.
    
 0.741
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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