STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_612Hypothetical protein; Tetratricopeptide TPR-1. (247 aa)    
Predicted Functional Partners:
cpaE
Putative pilus assembly protein.
 
  
 0.934
tadC
Type II secretion system F domain.
 
  
 0.900
AGA_610
Type II secretion system F domain.
 
  
 0.898
cpaC
Type II and III secretion system protein; pilus_MshL: pilus (MSHA type) biogenesis protein MshL; Belongs to the bacterial secretin family.
 
  
 0.876
cpaB
pilus_cpaB: Flp pilus assembly protein CpaB.
 
  
 0.863
cpaF
Type II secretion system protein E.
 
  
 0.856
AGA_613
Hypothetical protein; TadE-like.
     
 0.800
AGA_614
Hypothetical protein predicted by Glimmer/Critica.
       0.773
AGA_607
Putative pilus assembly protein; Pilus biogenesis CpaD-related.
  
  
 0.761
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
    
  0.727
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.