STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_613Hypothetical protein; TadE-like. (150 aa)    
Predicted Functional Partners:
AGA_610
Type II secretion system F domain.
  
  
 0.926
cpaB
pilus_cpaB: Flp pilus assembly protein CpaB.
  
  
 0.908
AGA_607
Putative pilus assembly protein; Pilus biogenesis CpaD-related.
  
  
 0.901
cpaE
Putative pilus assembly protein.
  
  
 0.901
cpaF
Type II secretion system protein E.
  
  
 0.865
tadC
Type II secretion system F domain.
  
    0.863
AGA_612
Hypothetical protein; Tetratricopeptide TPR-1.
  
  
 0.801
AGA_614
Hypothetical protein predicted by Glimmer/Critica.
       0.773
cpaC
Type II and III secretion system protein; pilus_MshL: pilus (MSHA type) biogenesis protein MshL; Belongs to the bacterial secretin family.
  
  
 0.708
AGA_603
Hypothetical protein predicted by Glimmer/Critica; Flp/Fap pilin component.
  
  
 0.594
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.