STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdeADiguanylate cyclase/phosphodiesterase. (609 aa)    
Predicted Functional Partners:
dos-2
Sensory box protein.
  
 0.927
AGA_1131
Diguanylate cyclase/phosphodiesterase.
 
  
  0.794
pleD
Hypothetical protein; Diguanylate cyclase, predicted.
0.758
AGA_2592
Metal dependent phosphohydrolase.
 
   
 0.705
cckA
Sensory box histidine kinase/response regulator; ATPase-like, ATP-binding domain.
    
 0.674
AGA_643
Hypothetical protein predicted by Glimmer/Critica.
       0.572
AGA_72
Putative phage protein; GGDEF: diguanylate cyclase (GGDEF) domain; PHAST result (e-value 1e-18).
  
 
 
0.499
AGA_1488
PAS/PAC sensor hybrid histidine kinase; ATPase-like, ATP-binding domain.
 
 
 0.498
AGA_639
Hypothetical protein.
       0.492
AGA_2590
Diguanylate cyclase.
 
 
0.455
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.