STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yhhSMajor facilitator superfamily MFS-1. (399 aa)    
Predicted Functional Partners:
AGA_1039
Gluconate 2-dehydrogenase gamma chain; [EC:1.1.99.3]; hypothetical protein.
  
     0.603
csbX
Major facilitator superfamily MFS_1.
  
     0.596
AGA_1038
[EC:1.1.99.3]; gluconate 2-dehydrogenase (acceptor) (EC:1.1.99.3), FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
  
  0.563
AGA_579
PQQ-dependent alcohol dehydrogenase cytochrome c subunit precursor.
  
     0.549
tetR-5
Transcriptional regulator, TetR family.
 
     0.549
metH
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.534
fusB-4
Fusaric acid resistance protein, conserved region.
  
     0.524
oprB-4
Carbohydrate-selective porin OprB.
  
     0.496
fusB-2
COG: Predicted membrane protein.
  
     0.492
fusB-3
Fusaric acid resistance protein, conserved region.
  
     0.492
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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