STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_656Hypothetical protein. (623 aa)    
Predicted Functional Partners:
AGA_1020
TonB-dependent siderophore receptor.
  
    0.770
AGA_2228
Protein of unknown function DUF1597.
  
     0.761
AGA_290
Hypothetical protein.
  
     0.758
AGA_2511
TonB-dependent receptor, beta-barrel.
  
     0.754
AGA_1904
Protein of unknown function DUF1597.
  
     0.747
AGA_1967
Hypothetical protein; COG: Predicted peptidase.
  
     0.744
vacJ
VacJ family lipoprotein.
    
 
 0.744
AGA_1061
Hypothetical protein; COG: Signal peptidase I.
  
     0.739
AGA_1107
Hypothetical protein.
  
 
 0.733
oprB-3
Porin; Carbohydrate-selective porin OprB.
  
     0.730
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.