STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_661Sorbitol dehydrogenase; FAD dependent oxidoreductase. (595 aa)    
Predicted Functional Partners:
AGA_1099
WD-40 repeat-containing protein.
    
 0.941
AGA_662
Gluconate 2-dehydrogenase (acceptor).
 
 
 0.925
adhB
Aldehyde dehydrogenase cytochrome c subunit; Cytochrome c, class I.
 
 
 
 0.894
AGA_1039
Gluconate 2-dehydrogenase gamma chain; [EC:1.1.99.3]; hypothetical protein.
 
 0.885
AGA_2480
Cytochrome c, class I.
 
 
 
 0.885
AGA_579
PQQ-dependent alcohol dehydrogenase cytochrome c subunit precursor.
 
 
 0.798
AGA_1037
Gluconate 2-dehydrogenase (acceptor); Cytochrome c, class I.
 
 
 0.765
AGA_1429
Hypothetical protein.
    
 0.750
AGA_952
Ankyrin repeat.
    
 0.750
tal
Glucose-6-phosphate isomerase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
   
 
  0.688
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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