STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_694TonB-dependent receptor, beta-barrel. (879 aa)    
Predicted Functional Partners:
AGA_1849
TonB-dependent receptor.
  
     0.762
AGA_2443
TonB-dependent receptor, beta-barrel.
  
     0.758
tonB
TonB-dependent receptor.
  
     0.722
AGA_1096
TonB-dependent receptor.
  
     0.718
AGA_2422
TonB-dependent receptor, beta-barrel.
  
     0.706
AGA_559
Hypothetical protein.
  
     0.686
oprB-3
Porin; Carbohydrate-selective porin OprB.
  
     0.595
AGA_70
TonB-dependent receptor, beta-barrel.
  
     0.587
AGA_1094
COG: Periplasmic protein TonB, links inner and outer membranes.
  
   0.569
AGA_1426
Hypothetical protein; CsbD-like; Belongs to the UPF0337 (CsbD) family.
  
     0.561
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.