STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGA_705Uncharacterised protein family UPF0153; Belongs to the UPF0260 family. (156 aa)    
Predicted Functional Partners:
AGA_704
Protein of unknown function DUF45.
       0.817
AGA_707
Extracellular solute-binding protein.
       0.787
AGA_706
Spermidine/putrescine transporter permease protein.
       0.773
AGA_708
ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.658
AGA_709
Hypothetical protein.
       0.478
np20
Fur family transcriptional regulator, zinc uptake regulator; Belongs to the Fur family.
  
     0.466
AGA_703
Integrase family protein; Integrase, catalytic core, phage; Belongs to the 'phage' integrase family.
       0.419
rnd-2
Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.
 
     0.410
AGA_710
Hypothetical protein.
       0.406
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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