STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
AGA_720Squalene synthase HpnC. (286 aa)    
Predicted Functional Partners:
crtB
Phytoene/squalene synthase.
  
 0.995
hpnE
Squalene-associated FAD-dependent desaturase; Amine oxidase.
 
  
 0.942
AGA_721
Glycosyl transferase family protein.
     0.890
dfrA
Dihydroflavonol-4-reductase.
 
   0.786
shc
Squalene-hopene cyclase.
 
 
 0.776
AGA_716
Hypothetical protein; Nucleoside phosphorylase.
 
   
 0.746
AGA_2023
Fatty acid hydroxylase.
 
 0.709
gapA
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.612
matE
MATE efflux family protein.
   
    0.580
AGA_723
Putative membrane protein.
 
     0.533
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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