STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
otsAAlpha,alpha-trehalose-phosphate synthase (UDP-forming). (447 aa)    
Predicted Functional Partners:
otsB
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
 
 
 0.999
galU
UTP-glucose-1-phosphate uridylyltransferase.
    
 0.883
AGA_2617
NAD-dependent epimerase/dehydratase.
     
  0.868
AGA_948
Cof-subfamily: Cof-like hydrolase.
 
  
 0.654
AGA_487
Putative hydrolase protein.
    
 0.595
AGA_761
Disulfide bond formation protein B.
       0.588
AGA_758
Protein of unknown function DUF2155.
       0.548
AGA_757
Hypothetical protein.
       0.543
AGA_670
Hypothetical protein; COG: dTDP-glucose pyrophosphorylase.
     
  0.507
fbaB
Fructose-bisphosphate aldolase, class I.
   
    0.503
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.