STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_766Hypothetical protein. (219 aa)    
Predicted Functional Partners:
tuf
Elongation factor EF-Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
    
   0.893
AGA_1562
Hypothetical protein.
  
     0.664
AGA_1176
Protein of unknown function DUF1150.
  
     0.660
AGA_767
Zinc protease.
       0.642
AGA_2525
Outer membrane protein.
  
     0.619
AGA_1094
COG: Periplasmic protein TonB, links inner and outer membranes.
  
     0.577
AGA_974
Protein of unknown function DUF2272.
  
     0.572
AGA_2023
Fatty acid hydroxylase.
  
  
 0.565
AGA_1612
Hypothetical protein; COG: Uncharacterized membrane-associated protein.
  
     0.561
AGA_1613
Membrane-bound lytic murein transglycosylase B.
  
     0.558
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.