STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oprO-2Phosphate-selective porin O/P. (574 aa)    
Predicted Functional Partners:
AGA_1342
Hypothetical protein.
  
     0.661
AGA_1341
Hypothetical protein; Mammalian cell entry related.
  
     0.650
AGA_1073
Putative TonB-dependent receptor.
  
     0.618
AGA_228
Hypothetical protein.
  
    0.616
fusB-7
Fusaric acid resistance protein, conserved region.
  
     0.609
maf-4
Maf-like protein.
  
     0.595
AGA_2239
Polysaccharide biosynthesis protein.
  
     0.588
AGA_1951
TonB-dependent receptor, beta-barrel.
  
     0.580
AGA_423
Hypothetical protein; COG: Type V secretory pathway, adhesin AidA.
  
     0.577
AGA_374
Hypothetical protein.
  
     0.569
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.