STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cydA[EC:1.10.3.-]; cytochrome bd ubiquinol oxidase subunit I, Cytochrome bd ubiquinol oxidase, subunit I. (530 aa)    
Predicted Functional Partners:
cioB
Cytochrome bd-I oxidase subunit II.
 0.999
cydB
Cytochrome bd-I oxidase subunit II.
 0.999
cydD-2
ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; ABC transporter, transmembrane domain.
 
  
 0.951
appC
Cytochrome bd-I oxidase subunit I.
  
  
 
0.948
cydC-2
ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC.
 
  
 0.917
cydD
ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD.
 
  
 0.762
AGA_842
Hypothetical protein predicted by Glimmer/Critica.
       0.707
cydC
ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC.
 
  
 0.697
cyaD
Cytochrome o ubiquinol oxidase operon protein cyoD.
     
 0.584
putA
K00318 proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.557
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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