STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGA_920Peroxiredoxin (alkyl hydroperoxide reductase subunit C). (219 aa)    
Predicted Functional Partners:
ccmG
Cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE.
  
 0.866
AGA_2490
Methylamine dehydrogenase accessory protein MauD.
  
 0.866
mauD
Hypothetical protein; MauD: methylamine dehydrogenase accessory protein MauD.
   
 0.863
arsR-2
HTH transcriptional regulator, ArsR.
 
   
 0.852
trxB
Thioredoxin reductase (NADPH).
  
 
 0.807
trxB-2
Thioredoxin reductase (NADPH).
  
 
 0.807
tag
DNA-3-methyladenine glycosylase I.
       0.768
tal
Glucose-6-phosphate isomerase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
  
 
 0.751
katE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 
 0.714
AGA_919
Beta-lactamase domain protein.
 
    0.637
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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