Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
BFRBacterioferritin; Belongs to the bacterioferritin family. (161 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.889
AGA_2495
BFD domain protein (2Fe-2S)-binding domain protein.
  
 
 0.868
hemO
Heme oxygenase.
     
  0.867
cckA
Sensory box histidine kinase/response regulator; ATPase-like, ATP-binding domain.
   
  
 0.845
AGA_186
Hypothetical protein.
   
  
 0.807
pleD
Hypothetical protein; Diguanylate cyclase, predicted.
   
    0.548
AGA_1092
Hypothetical protein.
     
 0.534
copA-2
CopA family copper resistance protein.
   
 
  0.522
AGA_929
Hypothetical protein.
       0.464
AGA_930
Hypothetical protein.
       0.464
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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