STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znuAABC transporter metal-binding lipoprotein. (303 aa)    
Predicted Functional Partners:
znuC
Putative cation ABC transporter, ATP-binding protein.
 
 
 0.997
AGA_984
Putative cation ABC transporter, permease protein; ABC-3.
 
 
 0.997
np20
Fur family transcriptional regulator, zinc uptake regulator; Belongs to the Fur family.
  
  
 0.648
rpsN
Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.626
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.619
AGA_979
Hypothetical protein.
       0.536
cobW
Cobalamin synthesis protein.
  
  
 0.510
AGA_2167
Hypothetical protein; Cobalamin (vitamin B12) biosynthesis CobW-like.
  
  
 0.510
cobW-2
Cobalamin biosynthesis protein CobW.
  
  
 0.510
AGA_978
L-asparaginase II.
       0.483
Your Current Organism:
Acetobacter ghanensis
NCBI taxonomy Id: 431306
Other names: A. ghanensis, Acetobacter ghanensis Cleenwerck et al. 2007, Acetobacter sp. 384, Acetobacter sp. 444B, DSM 18895, LMG 23848, LMG:23848, strain 430A, strain R-29337
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.