STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGM7Transglutaminase 7. (616 aa)    
Predicted Functional Partners:
F2
Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.
     
 0.603
SERPINE2
Serpin family E member 2; Belongs to the serpin family.
     
 0.544
FGA
Fibrinogen alpha chain.
    
 0.537
PROC
Protein C, inactivator of coagulation factors Va and VIIIa.
     
 0.516
Asmtl
Uncharacterized protein.
     
 0.497
FGG
Fibrinogen gamma chain.
    
 0.493
LHFPL5
LHFPL tetraspan subfamily member 5.
   
  
 0.473
ZNF408
Zinc finger protein 408.
    
  0.466
FGB
Fibrinogen beta chain.
    
 0.459
IKBKB
Inhibitor of nuclear factor kappa B kinase subunit beta.
    
  0.448
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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