STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDH6Cadherin 6; Cadherins are calcium-dependent cell adhesion proteins. (790 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta 1.
    
 0.737
JUP
Junction plakoglobin.
    
 0.699
CTNND1
Catenin delta 1.
    
 0.665
ARVCF
ARVCF delta catenin family member.
    
 0.659
CTNNA1
Catenin alpha 1.
    
 0.608
I3MZY4_ICTTR
Uncharacterized protein.
    
 0.608
I3N3K3_ICTTR
Uncharacterized protein.
    
 0.608
CTNND2
Catenin delta 2.
   
 0.605
PKP4
Plakophilin 4.
   
 0.604
ENSSTOP00000027088
Uncharacterized protein.
    
 0.577
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.