STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC1BStructural maintenance of chromosomes protein. (1237 aa)    
Predicted Functional Partners:
SMC3
Structural maintenance of chromosomes 3.
   
0.998
RAD21
RAD21 cohesin complex component.
   
 0.996
RAD21L1
RAD21 cohesin complex component like 1.
   
 0.995
STAG1
Stromal antigen 1.
   
 0.992
STAG2
Stromal antigen 2.
   
 0.992
NIPBL
Nipped-B protein.
   
 0.988
STAG3
Stromal antigen 3.
   
 0.987
REC8
REC8 meiotic recombination protein.
   
 0.984
PDS5B
PDS5 cohesin associated factor B.
   
 0.976
PDS5A
PDS5 cohesin associated factor A.
   
 0.976
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.