STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CACTINCactin, spliceosome C complex subunit. (720 aa)    
Predicted Functional Partners:
TIMM10
Translocase of inner mitochondrial membrane 10.
   
 0.977
Dhx8
DEAH-box helicase 8.
    
 0.957
SLU7
SLU7 homolog, splicing factor.
    
 0.953
CRNKL1
Crooked neck pre-mRNA splicing factor 1.
    
 
 0.943
FAM32A
Family with sequence similarity 32 member A.
    
 0.938
SDE2
SDE2 telomere maintenance homolog.
    
 0.937
CDC40
Cell division cycle 40.
    
 0.936
PRPF8
Pre-mRNA processing factor 8.
 
  
 
 0.933
CWC22
CWC22 spliceosome associated protein homolog.
    
 0.930
CDC5L
Cell division cycle 5 like.
    
 
 0.926
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.