PPID protein (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PPID

Peptidylprolyl isomerase D. (370 aa)

Predicted Functional Partners:

VDAC1

0.934

PTGES3

0.928

ENSSTOP00000026272

0.928

STIP1

0.915

PPIF

0.911

I3M249_ICTTR

0.907

HSP90AA1

0.907

HSP90AB1

0.907

LOC101975245

0.907

SLC25A4

0.901

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSTOP00000026272	HSP90AA1	ENSSTOP00000026272	ENSSTOP00000008658	CS domain-containing protein.	Heat shock protein 90 alpha family class A member 1.	0.937
ENSSTOP00000026272	HSP90AB1	ENSSTOP00000026272	ENSSTOP00000022132	CS domain-containing protein.	Heat shock protein 90 alpha family class B member 1.	0.937
ENSSTOP00000026272	I3M249_ICTTR	ENSSTOP00000026272	ENSSTOP00000003001	CS domain-containing protein.	Uncharacterized protein.	0.937
ENSSTOP00000026272	LOC101975245	ENSSTOP00000026272	ENSSTOP00000023173	CS domain-containing protein.	HATPase_c domain-containing protein.	0.937
ENSSTOP00000026272	PPID	ENSSTOP00000026272	ENSSTOP00000001387	CS domain-containing protein.	Peptidylprolyl isomerase D.	0.928
ENSSTOP00000026272	PPIF	ENSSTOP00000026272	ENSSTOP00000002698	CS domain-containing protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.662
ENSSTOP00000026272	STIP1	ENSSTOP00000026272	ENSSTOP00000012776	CS domain-containing protein.	Stress induced phosphoprotein 1.	0.962
HSP90AA1	ENSSTOP00000026272	ENSSTOP00000008658	ENSSTOP00000026272	Heat shock protein 90 alpha family class A member 1.	CS domain-containing protein.	0.937
HSP90AA1	PPID	ENSSTOP00000008658	ENSSTOP00000001387	Heat shock protein 90 alpha family class A member 1.	Peptidylprolyl isomerase D.	0.907
HSP90AA1	PPIF	ENSSTOP00000008658	ENSSTOP00000002698	Heat shock protein 90 alpha family class A member 1.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.696
HSP90AA1	PTGES3	ENSSTOP00000008658	ENSSTOP00000025035	Heat shock protein 90 alpha family class A member 1.	CS domain-containing protein.	0.937
HSP90AA1	STIP1	ENSSTOP00000008658	ENSSTOP00000012776	Heat shock protein 90 alpha family class A member 1.	Stress induced phosphoprotein 1.	0.986
HSP90AA1	VDAC1	ENSSTOP00000008658	ENSSTOP00000006945	Heat shock protein 90 alpha family class A member 1.	Voltage dependent anion channel 1.	0.407
HSP90AB1	ENSSTOP00000026272	ENSSTOP00000022132	ENSSTOP00000026272	Heat shock protein 90 alpha family class B member 1.	CS domain-containing protein.	0.937
HSP90AB1	PPID	ENSSTOP00000022132	ENSSTOP00000001387	Heat shock protein 90 alpha family class B member 1.	Peptidylprolyl isomerase D.	0.907
HSP90AB1	PPIF	ENSSTOP00000022132	ENSSTOP00000002698	Heat shock protein 90 alpha family class B member 1.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.696
HSP90AB1	PTGES3	ENSSTOP00000022132	ENSSTOP00000025035	Heat shock protein 90 alpha family class B member 1.	CS domain-containing protein.	0.937
HSP90AB1	STIP1	ENSSTOP00000022132	ENSSTOP00000012776	Heat shock protein 90 alpha family class B member 1.	Stress induced phosphoprotein 1.	0.990
HSP90AB1	VDAC1	ENSSTOP00000022132	ENSSTOP00000006945	Heat shock protein 90 alpha family class B member 1.	Voltage dependent anion channel 1.	0.407
I3M249_ICTTR	ENSSTOP00000026272	ENSSTOP00000003001	ENSSTOP00000026272	Uncharacterized protein.	CS domain-containing protein.	0.937