STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDHR5Cadherin related family member 5. (824 aa)    
Predicted Functional Partners:
CDHR2
Cadherin related family member 2.
   
 0.970
CDH23
Cadherin related 23.
   
0.948
CTNNB1
Catenin beta 1.
    
 0.772
LHFPL5
LHFPL tetraspan subfamily member 5.
   
 0.763
LHFPL4
LHFPL tetraspan subfamily member 4.
   
 0.763
ENSSTOP00000031958
Uncharacterized protein.
   
 0.763
JUP
Junction plakoglobin.
    
 0.750
CDH8
Cadherin 8; Cadherins are calcium-dependent cell adhesion proteins.
   
 0.713
CDH11
Cadherin 11; Cadherins are calcium-dependent cell adhesion proteins.
   
 0.704
USH1C
USH1 protein network component harmonin.
   
 
 0.702
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.