STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM39Tripartite motif containing 39. (488 aa)    
Predicted Functional Partners:
ICOS
Inducible T cell costimulator.
   
 0.661
DDX58
DExD/H-box helicase 58.
   
 0.583
PTEN
Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.
    
  0.558
UBE2L6
Ubiquitin conjugating enzyme E2 L6; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.546
Rps27a
Ubiquitin-like domain-containing protein.
    
  0.538
LOC101966763
Ubiquitin-like domain-containing protein.
    
  0.538
ENSSTOP00000031366
Ubiquitin-like domain-containing protein.
    
  0.538
ZFAND4
Zinc finger AN1-type containing 4.
    
 0.537
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.524
ENSSTOP00000028703
Ubiquitin-like domain-containing protein.
    
  0.524
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.