STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LAMP1Lysosomal associated membrane protein 1. (389 aa)    
Predicted Functional Partners:
LAMP2
Lysosomal associated membrane protein 2.
  
0.996
Ctsd
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
   
 
 0.960
MTOR
Serine/threonine-protein kinase mTOR; Belongs to the PI3/PI4-kinase family.
    
 
 0.958
NPRL2
NPR2 like, GATOR1 complex subunit.
    
 
 0.956
RPTOR
Regulatory associated protein of MTOR complex 1.
    
 
 0.951
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family.
    
 
 0.946
NPRL3
NPR3 like, GATOR1 complex subunit.
    
 
 0.946
WDR24
WD repeat domain 24.
    
 
 0.944
Depdc5
DEP domain-containing protein.
    
 
 0.944
KPTN
Kaptin, actin binding protein.
    
   0.941
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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