STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TTC13Tetratricopeptide repeat domain 13. (725 aa)    
Predicted Functional Partners:
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.931
I3MHF1_ICTTR
Uncharacterized protein.
   
 0.794
BBS9
Bardet-Biedl syndrome 9.
    
 0.778
TTC8
Tetratricopeptide repeat domain 8.
    
 0.755
NUDT12
Nudix hydrolase 12.
   
  0.732
I3M5T4_ICTTR
DUF4062 domain-containing protein.
   
 0.718
TEP1
Telomerase associated protein 1.
   
 0.718
BBS7
Bardet-Biedl syndrome 7.
    
 0.697
HAS1
Hyaluronan synthase 1.
  
 0.691
HAS2
Hyaluronan synthase 2.
  
 0.691
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.