STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF4BPre-mRNA processing factor 4B. (1009 aa)    
Predicted Functional Partners:
PRPF6
Pre-mRNA processing factor 6.
    
 
 0.971
PRPF31
Pre-mRNA processing factor 31.
    
 
 0.957
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.955
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.955
PRPF8
Pre-mRNA processing factor 8.
    
 
 0.947
RBM25
RNA binding motif protein 25.
   
  0.942
SNRNP200
Small nuclear ribonucleoprotein U5 subunit 200.
    
 
 0.936
PRPF4
Pre-mRNA processing factor 4.
    
 
 0.934
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 
 0.933
DDX23
DEAD-box helicase 23.
 
 
 0.931
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.