STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCAF11SR-related CTD associated factor 11. (1455 aa)    
Predicted Functional Partners:
NIPBL
Nipped-B protein.
   
  
 0.801
THOC2
THO complex 2.
   
    0.790
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.786
ATRX
ATRX chromatin remodeler.
   
    0.777
STAG2
Stromal antigen 2.
   
  
 0.749
SMCHD1
Structural maintenance of chromosomes flexible hinge domain containing 1.
   
    0.723
PHIP
Pleckstrin homology domain interacting protein.
   
    0.704
BCLAF1
BCL2 associated transcription factor 1.
  
    0.700
SMC5
Structural maintenance of chromosomes 5.
   
    0.683
PBRM1
Polybromo 1.
   
    0.632
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.