STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LHX3LIM homeobox 3. (403 aa)    
Predicted Functional Partners:
ISL1
ISL LIM homeobox 1.
   
0.966
ISL2
ISL LIM homeobox 2.
   
0.935
LDB1
LIM domain binding 1.
    
 0.900
ALX3
ALX homeobox 3.
   
0.867
LDB2
LIM domain binding 2.
    
 0.861
PROP1
PROP paired-like homeobox 1.
    
0.652
SSBP2
Single stranded DNA binding protein 2.
    
 
 0.646
SSBP3
Single stranded DNA binding protein 3.
    
 
 0.620
HESX1
HESX homeobox 1.
    
0.612
SSBP4
Single stranded DNA binding protein 4.
    
 
 0.609
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.