STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHMP4BCharged multivesicular body protein 4B. (224 aa)    
Predicted Functional Partners:
CHMP6
Charged multivesicular body protein 6.
    
0.994
Chmp3
Uncharacterized protein.
   
 0.994
PDCD6IP
Programmed cell death 6 interacting protein.
    
 0.993
PTPN23
Protein tyrosine phosphatase non-receptor type 23.
    
 0.992
Vps4a
Uncharacterized protein; Belongs to the AAA ATPase family.
    
 0.986
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
    
 0.986
CHMP1A
Charged multivesicular body protein 1A.
    
 0.985
I3NBU5_ICTTR
Uncharacterized protein.
    
 0.979
Chmp2a
Uncharacterized protein.
    
 0.979
ENSSTOP00000023977
Uncharacterized protein.
  
 0.978
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.