SNX24 protein (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SNX24

Sorting nexin 24. (149 aa)

Predicted Functional Partners:

SNX22

0.713

GAPVD1

0.699

SNX11

0.608

SPATA46

0.564

LOC101967743

0.563

LOC101957545

0.563

CSNK1A1

0.563

YKT6

0.490

SNX10

0.456

RINT1

0.446

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSNK1A1	GAPVD1	ENSSTOP00000030618	ENSSTOP00000015110	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	GTPase activating protein and VPS9 domains 1.	0.578
CSNK1A1	LOC101967743	ENSSTOP00000030618	ENSSTOP00000004783	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.851
CSNK1A1	SNX24	ENSSTOP00000030618	ENSSTOP00000005711	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Sorting nexin 24.	0.563
GAPVD1	CSNK1A1	ENSSTOP00000015110	ENSSTOP00000030618	GTPase activating protein and VPS9 domains 1.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.578
GAPVD1	LOC101957545	ENSSTOP00000015110	ENSSTOP00000016465	GTPase activating protein and VPS9 domains 1.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.578
GAPVD1	LOC101967743	ENSSTOP00000015110	ENSSTOP00000004783	GTPase activating protein and VPS9 domains 1.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.712
GAPVD1	SNX22	ENSSTOP00000015110	ENSSTOP00000020426	GTPase activating protein and VPS9 domains 1.	Sorting nexin 22.	0.531
GAPVD1	SNX24	ENSSTOP00000015110	ENSSTOP00000005711	GTPase activating protein and VPS9 domains 1.	Sorting nexin 24.	0.699
GAPVD1	SPATA46	ENSSTOP00000015110	ENSSTOP00000009503	GTPase activating protein and VPS9 domains 1.	Spermatogenesis associated 46.	0.565
LOC101957545	GAPVD1	ENSSTOP00000016465	ENSSTOP00000015110	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	GTPase activating protein and VPS9 domains 1.	0.578
LOC101957545	LOC101967743	ENSSTOP00000016465	ENSSTOP00000004783	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.787
LOC101957545	SNX24	ENSSTOP00000016465	ENSSTOP00000005711	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Sorting nexin 24.	0.563
LOC101967743	CSNK1A1	ENSSTOP00000004783	ENSSTOP00000030618	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.851
LOC101967743	GAPVD1	ENSSTOP00000004783	ENSSTOP00000015110	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	GTPase activating protein and VPS9 domains 1.	0.712
LOC101967743	LOC101957545	ENSSTOP00000004783	ENSSTOP00000016465	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.787
LOC101967743	SNX24	ENSSTOP00000004783	ENSSTOP00000005711	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Sorting nexin 24.	0.563
RINT1	SNX22	ENSSTOP00000032217	ENSSTOP00000020426	RAD50 interactor 1.	Sorting nexin 22.	0.446
RINT1	SNX24	ENSSTOP00000032217	ENSSTOP00000005711	RAD50 interactor 1.	Sorting nexin 24.	0.446
RINT1	YKT6	ENSSTOP00000032217	ENSSTOP00000000400	RAD50 interactor 1.	YKT6 v-SNARE homolog; Belongs to the synaptobrevin family.	0.447
SNX10	SNX22	ENSSTOP00000017986	ENSSTOP00000020426	Sorting nexin 10.	Sorting nexin 22.	0.554