STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAX2Ventral anterior homeobox 2. (292 aa)    
Predicted Functional Partners:
BSX
Brain specific homeobox.
   
 
0.655
Nanog
Homeobox domain-containing protein.
   
  0.645
PHACTR4
Phosphatase and actin regulator.
      
 0.589
FOXE3
Forkhead box E3.
    
 
 0.579
CRYBB1
Crystallin beta B1; Belongs to the beta/gamma-crystallin family.
      
 0.537
PAX2
Paired box 2.
      
 0.525
SIX6
SIX homeobox 6.
   
 
 0.522
SIX3
SIX homeobox 3.
   
 
 0.508
SIX5
SIX homeobox 5.
  
 
 
 0.492
PHACTR2
Phosphatase and actin regulator.
      
 0.420
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.