SMCO4 protein (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMCO4

Single-pass membrane protein with coiled-coil domains 4. (59 aa)

Predicted Functional Partners:

VSTM5

0.568

NUDT6

0.422

C11orf54

0.412

LOC101958048

0.410

HEPHL1

0.410

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C11orf54	LOC101958048	ENSSTOP00000007216	ENSSTOP00000008414	Chromosome 11 open reading frame 54.	Uncharacterized protein.	0.591
C11orf54	SMCO4	ENSSTOP00000007216	ENSSTOP00000007153	Chromosome 11 open reading frame 54.	Single-pass membrane protein with coiled-coil domains 4.	0.412
C11orf54	VSTM5	ENSSTOP00000007216	ENSSTOP00000018034	Chromosome 11 open reading frame 54.	V-set and transmembrane domain containing 5.	0.463
HEPHL1	SMCO4	ENSSTOP00000018494	ENSSTOP00000007153	Hephaestin like 1; Belongs to the multicopper oxidase family.	Single-pass membrane protein with coiled-coil domains 4.	0.410
LOC101958048	C11orf54	ENSSTOP00000008414	ENSSTOP00000007216	Uncharacterized protein.	Chromosome 11 open reading frame 54.	0.591
LOC101958048	SMCO4	ENSSTOP00000008414	ENSSTOP00000007153	Uncharacterized protein.	Single-pass membrane protein with coiled-coil domains 4.	0.410
LOC101958048	VSTM5	ENSSTOP00000008414	ENSSTOP00000018034	Uncharacterized protein.	V-set and transmembrane domain containing 5.	0.454
NUDT6	SMCO4	ENSSTOP00000017957	ENSSTOP00000007153	Nudix hydrolase 6; Belongs to the Nudix hydrolase family.	Single-pass membrane protein with coiled-coil domains 4.	0.422
SMCO4	C11orf54	ENSSTOP00000007153	ENSSTOP00000007216	Single-pass membrane protein with coiled-coil domains 4.	Chromosome 11 open reading frame 54.	0.412
SMCO4	HEPHL1	ENSSTOP00000007153	ENSSTOP00000018494	Single-pass membrane protein with coiled-coil domains 4.	Hephaestin like 1; Belongs to the multicopper oxidase family.	0.410
SMCO4	LOC101958048	ENSSTOP00000007153	ENSSTOP00000008414	Single-pass membrane protein with coiled-coil domains 4.	Uncharacterized protein.	0.410
SMCO4	NUDT6	ENSSTOP00000007153	ENSSTOP00000017957	Single-pass membrane protein with coiled-coil domains 4.	Nudix hydrolase 6; Belongs to the Nudix hydrolase family.	0.422
SMCO4	VSTM5	ENSSTOP00000007153	ENSSTOP00000018034	Single-pass membrane protein with coiled-coil domains 4.	V-set and transmembrane domain containing 5.	0.568
VSTM5	C11orf54	ENSSTOP00000018034	ENSSTOP00000007216	V-set and transmembrane domain containing 5.	Chromosome 11 open reading frame 54.	0.463
VSTM5	LOC101958048	ENSSTOP00000018034	ENSSTOP00000008414	V-set and transmembrane domain containing 5.	Uncharacterized protein.	0.454
VSTM5	SMCO4	ENSSTOP00000018034	ENSSTOP00000007153	V-set and transmembrane domain containing 5.	Single-pass membrane protein with coiled-coil domains 4.	0.568