STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDK9Cyclin dependent kinase 9; Belongs to the protein kinase superfamily. (372 aa)    
Predicted Functional Partners:
CCNT1
Cyclin T1; Belongs to the cyclin family.
   
 0.999
CCNT2
Cyclin T2; Belongs to the cyclin family.
   
 0.996
AFF4
AF4/FMR2 family member 4.
    
 0.994
CCNK
Cyclin K; Belongs to the cyclin family.
   
 0.992
Polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.990
AFF1
AF4/FMR2 family member 1.
    
 0.988
MLLT1
MLLT1 super elongation complex subunit.
    
 0.985
LARP7
La ribonucleoprotein domain family member 7.
   
 0.974
MLLT3
MLLT3 super elongation complex subunit.
    
 0.974
SUPT5H
Transcription elongation factor SPT5.
    
 0.968
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.