STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rtp4Uncharacterized protein. (58 aa)    
Predicted Functional Partners:
Usp18
USP domain-containing protein; Belongs to the peptidase C19 family.
   
  
 0.902
IRF7
Interferon regulatory factor 7.
   
  
 0.864
ENSSTOP00000026985
OAS1_C domain-containing protein.
   
  
 0.858
RSAD2
Radical S-adenosyl methionine domain containing 2.
   
  
 0.843
IFI35
Interferon induced protein 35.
   
  
 0.805
IFIH1
Interferon induced with helicase C domain 1.
   
  
 0.804
PARP9
Poly(ADP-ribose) polymerase family member 9.
   
  
 0.792
RNF213
Ring finger protein 213.
   
  
 0.790
OAS1
2'-5'-oligoadenylate synthetase 1.
   
  
 0.781
CXCL10
C-X-C motif chemokine.
   
  
 0.763
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.