GRIK2 protein (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GRIK2

Glutamate ionotropic receptor kainate type subunit 2. (908 aa)

Predicted Functional Partners:

GRIK5

0.995

GRIK4

0.984

DLG4

0.951

GRIK1

0.943

GRIK3

0.927

DLG3

0.816

GRIN1

0.814

GRID2

0.732

GRIN2C

0.730

GRIN2B

0.728

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DLG3	DLG4	ENSSTOP00000024267	ENSSTOP00000024732	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	0.982
DLG3	GRID2	ENSSTOP00000024267	ENSSTOP00000008224	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Glutamate ionotropic receptor delta type subunit 2.	0.629
DLG3	GRIK1	ENSSTOP00000024267	ENSSTOP00000028927	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Glutamate ionotropic receptor kainate type subunit 1.	0.675
DLG3	GRIK2	ENSSTOP00000024267	ENSSTOP00000009498	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Glutamate ionotropic receptor kainate type subunit 2.	0.816
DLG3	GRIK3	ENSSTOP00000024267	ENSSTOP00000009556	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Glutamate ionotropic receptor kainate type subunit 3.	0.700
DLG3	GRIK4	ENSSTOP00000024267	ENSSTOP00000014226	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Glutamate ionotropic receptor kainate type subunit 4.	0.742
DLG3	GRIK5	ENSSTOP00000024267	ENSSTOP00000010769	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Glutamate ionotropic receptor kainate type subunit 5.	0.741
DLG3	GRIN1	ENSSTOP00000024267	ENSSTOP00000025593	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Glutamate ionotropic receptor NMDA type subunit 1.	0.955
DLG3	GRIN2B	ENSSTOP00000024267	ENSSTOP00000000825	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Glutamate ionotropic receptor NMDA type subunit 2B.	0.977
DLG3	GRIN2C	ENSSTOP00000024267	ENSSTOP00000008632	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	Glutamate ionotropic receptor NMDA type subunit 2C; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.852
DLG4	DLG3	ENSSTOP00000024732	ENSSTOP00000024267	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Discs large MAGUK scaffold protein 3; Belongs to the MAGUK family.	0.982
DLG4	GRID2	ENSSTOP00000024732	ENSSTOP00000008224	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Glutamate ionotropic receptor delta type subunit 2.	0.647
DLG4	GRIK1	ENSSTOP00000024732	ENSSTOP00000028927	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Glutamate ionotropic receptor kainate type subunit 1.	0.862
DLG4	GRIK2	ENSSTOP00000024732	ENSSTOP00000009498	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Glutamate ionotropic receptor kainate type subunit 2.	0.951
DLG4	GRIK3	ENSSTOP00000024732	ENSSTOP00000009556	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Glutamate ionotropic receptor kainate type subunit 3.	0.700
DLG4	GRIK4	ENSSTOP00000024732	ENSSTOP00000014226	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Glutamate ionotropic receptor kainate type subunit 4.	0.798
DLG4	GRIK5	ENSSTOP00000024732	ENSSTOP00000010769	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Glutamate ionotropic receptor kainate type subunit 5.	0.858
DLG4	GRIN1	ENSSTOP00000024732	ENSSTOP00000025593	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Glutamate ionotropic receptor NMDA type subunit 1.	0.996
DLG4	GRIN2B	ENSSTOP00000024732	ENSSTOP00000000825	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Glutamate ionotropic receptor NMDA type subunit 2B.	0.996
DLG4	GRIN2C	ENSSTOP00000024732	ENSSTOP00000008632	Discs large MAGUK scaffold protein 4; Belongs to the MAGUK family.	Glutamate ionotropic receptor NMDA type subunit 2C; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.971