STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oc90Uncharacterized protein. (483 aa)    
Predicted Functional Partners:
ENSSTOP00000029566
UBIQUITIN_CONJUGAT_2 domain-containing protein.
     
 0.873
PLA2G4A
Phospholipase A2.
     
 0.870
UBE2V1
Ubiquitin conjugating enzyme E2 V1.
     
 0.850
HHLA1
HERV-H LTR-associating 1.
 
    
 0.753
PLB1
Phospholipase B1.
     
 0.637
OTOP1
Otopetrin 1.
      
 0.603
PLA2G6
Phospholipase A2 group VI.
   
 
 0.602
OTOL1
Otolin 1.
      
 0.575
PLA2G4D
Phospholipase A2.
     
 0.502
PNPLA7
Patatin like phospholipase domain containing 7.
     
 0.491
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.