STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHRNECholinergic receptor nicotinic epsilon subunit. (493 aa)    
Predicted Functional Partners:
CHRNA1
Cholinergic receptor nicotinic alpha 1 subunit.
  
0.863
I3MWZ0_ICTTR
Uncharacterized protein.
     
 0.839
I3NE76_ICTTR
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
0.735
CHRNA4
Cholinergic receptor nicotinic alpha 4 subunit.
  
 
0.715
CHRNB3
Cholinergic receptor nicotinic beta 3 subunit.
  
0.715
CHRNA5
Cholinergic receptor nicotinic alpha 5 subunit.
  
 
0.710
CHRNA2
Cholinergic receptor nicotinic alpha 2 subunit.
  
 
0.695
RAPSN
Receptor associated protein of the synapse.
   
 
 0.659
HNRNPL
Heterogeneous nuclear ribonucleoprotein L.
      
 0.553
COLQ
Collagen like tail subunit of asymmetric acetylcholinesterase.
    
 
 0.527
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.