STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VRK1VRK serine/threonine kinase 1; Belongs to the protein kinase superfamily. (396 aa)    
Predicted Functional Partners:
Ltv1
LTV1 ribosome biogenesis factor.
    
 0.919
ANKLE2
Ankyrin repeat and LEM domain containing 2.
   
 0.878
BYSL
Bystin like.
    
 0.848
RIOK2
RIO kinase 2.
    
 0.839
Banf1
Uncharacterized protein.
    
 0.788
ENSSTOP00000026236
Uncharacterized protein.
    
 0.788
ENSSTOP00000030168
Uncharacterized protein.
    
 0.788
TSR1
TSR1 ribosome maturation factor.
    
 0.769
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.753
PER1
Period circadian regulator 1.
    
 0.753
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.