Slc25a6 protein (Ictidomys tridecemlineatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Slc25a6

Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (313 aa)

Predicted Functional Partners:

PPIF

0.879

VDAC1

0.802

CS

0.790

PPID

0.786

VDAC3

0.785

VDAC2

0.785

TSPO

0.768

ATP5F1A

0.768

SLC25A1

0.732

SLC25A4

0.720

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP5F1A	CS	ENSSTOP00000029590	ENSSTOP00000014291	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Citrate synthase; Belongs to the citrate synthase family.	0.955
ATP5F1A	SLC25A4	ENSSTOP00000029590	ENSSTOP00000019172	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Solute carrier family 25 member 4; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.768
ATP5F1A	Slc25a6	ENSSTOP00000029590	ENSSTOP00000010385	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.768
ATP5F1A	VDAC1	ENSSTOP00000029590	ENSSTOP00000006945	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Voltage dependent anion channel 1.	0.738
ATP5F1A	VDAC2	ENSSTOP00000029590	ENSSTOP00000029481	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Voltage dependent anion channel 2.	0.711
ATP5F1A	VDAC3	ENSSTOP00000029590	ENSSTOP00000005258	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Voltage dependent anion channel 3.	0.711
CS	ATP5F1A	ENSSTOP00000014291	ENSSTOP00000029590	Citrate synthase; Belongs to the citrate synthase family.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.955
CS	PPIF	ENSSTOP00000014291	ENSSTOP00000002698	Citrate synthase; Belongs to the citrate synthase family.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.606
CS	SLC25A1	ENSSTOP00000014291	ENSSTOP00000002529	Citrate synthase; Belongs to the citrate synthase family.	Solute carrier family 25 member 1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.971
CS	SLC25A4	ENSSTOP00000014291	ENSSTOP00000019172	Citrate synthase; Belongs to the citrate synthase family.	Solute carrier family 25 member 4; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.790
CS	Slc25a6	ENSSTOP00000014291	ENSSTOP00000010385	Citrate synthase; Belongs to the citrate synthase family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.790
CS	VDAC1	ENSSTOP00000014291	ENSSTOP00000006945	Citrate synthase; Belongs to the citrate synthase family.	Voltage dependent anion channel 1.	0.592
CS	VDAC2	ENSSTOP00000014291	ENSSTOP00000029481	Citrate synthase; Belongs to the citrate synthase family.	Voltage dependent anion channel 2.	0.551
CS	VDAC3	ENSSTOP00000014291	ENSSTOP00000005258	Citrate synthase; Belongs to the citrate synthase family.	Voltage dependent anion channel 3.	0.576
PPID	PPIF	ENSSTOP00000001387	ENSSTOP00000002698	Peptidylprolyl isomerase D.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.911
PPID	SLC25A1	ENSSTOP00000001387	ENSSTOP00000002529	Peptidylprolyl isomerase D.	Solute carrier family 25 member 1; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.405
PPID	SLC25A4	ENSSTOP00000001387	ENSSTOP00000019172	Peptidylprolyl isomerase D.	Solute carrier family 25 member 4; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.901
PPID	Slc25a6	ENSSTOP00000001387	ENSSTOP00000010385	Peptidylprolyl isomerase D.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.786
PPID	VDAC1	ENSSTOP00000001387	ENSSTOP00000006945	Peptidylprolyl isomerase D.	Voltage dependent anion channel 1.	0.934
PPID	VDAC2	ENSSTOP00000001387	ENSSTOP00000029481	Peptidylprolyl isomerase D.	Voltage dependent anion channel 2.	0.880