STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCFD2Sec1 family domain containing 2; Belongs to the STXBP/unc-18/SEC1 family. (684 aa)    
Predicted Functional Partners:
ZW10
Zw10 kinetochore protein.
    
 
 0.918
RINT1
RAD50 interactor 1.
   
 
 0.902
STX18
Syntaxin 18.
    
 
 0.898
NBAS
Neuroblastoma amplified sequence.
    
 
 0.878
USE1
Unconventional SNARE in the ER 1.
   
   0.806
SCFD1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.750
NAPG
NSF attachment protein gamma.
    
   0.703
SEC22B
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
   
   0.698
CUNH19orf25
Uncharacterized protein.
    
   0.564
STX12
Syntaxin 12; Belongs to the syntaxin family.
    
   0.563
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.