STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C9orf135Chromosome 9 open reading frame 135. (230 aa)    
Predicted Functional Partners:
WDR90
WD repeat domain 90.
    
   0.931
SPAG8
Sperm associated antigen 8.
  
 
   0.914
TEKT1
Tektin 1.
   
 
 0.905
C1orf194
Chromosome 1 open reading frame 194.
   
   0.902
CFAP52
Cilia and flagella associated protein 52.
   
   0.901
Cfap126
Uncharacterized protein.
   
   0.901
EFHC1
EF-hand domain containing 1.
   
   0.900
RIBC2
RIB43A domain with coiled-coils 2.
   
   0.900
TEKT2
Tektin 2.
   
   0.898
TEKT3
Tektin 3.
   
   0.898
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.