STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COILCoilin. (529 aa)    
Predicted Functional Partners:
DDX58
DExD/H-box helicase 58.
     
 0.764
IKBKG
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
 0.693
TAB2
TGF-beta activated kinase 1 (MAP3K7) binding protein 2.
    
 0.645
TAB3
TGF-beta activated kinase 1 (MAP3K7) binding protein 3.
    
 0.645
MTFMT
Mitochondrial methionyl-tRNA formyltransferase.
  
   0.635
BCKDHB
Branched chain keto acid dehydrogenase E1 subunit beta.
   
 0.619
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
  
 
 0.615
RIPK4
Receptor interacting serine/threonine kinase 4.
   
 0.601
MAP2K7
Mitogen-activated protein kinase kinase 7.
    
 0.601
Bckdha
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
  
 0.597
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.