UFSP2 protein (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UFSP2

UFM1 specific peptidase 2. (463 aa)

Predicted Functional Partners:

UFM1

0.971

DDRGK1

0.673

UFL1

0.639

UFC1

0.624

UBA5

0.609

CDK5RAP3

0.586

Odr4

0.582

ENSSTOP00000025415

0.582

CCDC86

0.561

TRIP4

0.550

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDC86	UFSP2	ENSSTOP00000015388	ENSSTOP00000011686	Coiled-coil domain containing 86.	UFM1 specific peptidase 2.	0.561
CDK5RAP3	DDRGK1	ENSSTOP00000005584	ENSSTOP00000005747	CDK5 regulatory subunit associated protein 3.	DDRGK domain containing 1.	0.971
CDK5RAP3	UBA5	ENSSTOP00000005584	ENSSTOP00000010906	CDK5 regulatory subunit associated protein 3.	Ubiquitin like modifier activating enzyme 5.	0.556
CDK5RAP3	UFC1	ENSSTOP00000005584	ENSSTOP00000019491	CDK5 regulatory subunit associated protein 3.	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	0.649
CDK5RAP3	UFL1	ENSSTOP00000005584	ENSSTOP00000025198	CDK5 regulatory subunit associated protein 3.	UFM1 specific ligase 1.	0.969
CDK5RAP3	UFM1	ENSSTOP00000005584	ENSSTOP00000031157	CDK5 regulatory subunit associated protein 3.	Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.	0.504
CDK5RAP3	UFSP2	ENSSTOP00000005584	ENSSTOP00000011686	CDK5 regulatory subunit associated protein 3.	UFM1 specific peptidase 2.	0.586
DDRGK1	CDK5RAP3	ENSSTOP00000005747	ENSSTOP00000005584	DDRGK domain containing 1.	CDK5 regulatory subunit associated protein 3.	0.971
DDRGK1	UBA5	ENSSTOP00000005747	ENSSTOP00000010906	DDRGK domain containing 1.	Ubiquitin like modifier activating enzyme 5.	0.590
DDRGK1	UFC1	ENSSTOP00000005747	ENSSTOP00000019491	DDRGK domain containing 1.	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	0.822
DDRGK1	UFL1	ENSSTOP00000005747	ENSSTOP00000025198	DDRGK domain containing 1.	UFM1 specific ligase 1.	0.967
DDRGK1	UFM1	ENSSTOP00000005747	ENSSTOP00000031157	DDRGK domain containing 1.	Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.	0.741
DDRGK1	UFSP2	ENSSTOP00000005747	ENSSTOP00000011686	DDRGK domain containing 1.	UFM1 specific peptidase 2.	0.673
ENSSTOP00000025415	UFSP2	ENSSTOP00000025415	ENSSTOP00000011686	Uncharacterized protein.	UFM1 specific peptidase 2.	0.582
Odr4	UFSP2	ENSSTOP00000016069	ENSSTOP00000011686	Uncharacterized protein.	UFM1 specific peptidase 2.	0.582
TRIP4	UBA5	ENSSTOP00000025264	ENSSTOP00000010906	Thyroid hormone receptor interactor 4.	Ubiquitin like modifier activating enzyme 5.	0.407
TRIP4	UFC1	ENSSTOP00000025264	ENSSTOP00000019491	Thyroid hormone receptor interactor 4.	Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.	0.418
TRIP4	UFL1	ENSSTOP00000025264	ENSSTOP00000025198	Thyroid hormone receptor interactor 4.	UFM1 specific ligase 1.	0.440
TRIP4	UFM1	ENSSTOP00000025264	ENSSTOP00000031157	Thyroid hormone receptor interactor 4.	Ubiquitin-fold modifier 1; Ubiquitin-like modifier which can be covalently attached to substrate proteins as a monomer or a lysine-linked polymer in a post- translational process called ufmylation. Ufmylation on lysine residues of proteins may play a crucial role in a number of cellular processes.	0.430
TRIP4	UFSP2	ENSSTOP00000025264	ENSSTOP00000011686	Thyroid hormone receptor interactor 4.	UFM1 specific peptidase 2.	0.550