STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HDLBPHigh density lipoprotein binding protein. (1265 aa)    
Predicted Functional Partners:
RACK1
Receptor for activated C kinase 1.
   
 
 0.896
DNAJC2
DnaJ heat shock protein family (Hsp40) member C2.
   
   0.807
EEF1G
Uncharacterized protein.
   
   0.789
LOC101970647
Uncharacterized protein.
   
   0.789
APOA1
Apolipoprotein A1.
     
 0.762
DDX6
DEAD-box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.729
APOA4
Apolipoprotein A4.
     
 0.706
WDR31
WD repeat domain 31.
   
 
 0.698
EPRS1
Glutamyl-prolyl-tRNA synthetase.
   
   0.641
SAE1
SUMO1 activating enzyme subunit 1.
    
 
 0.624
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.