STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLCO4C1Solute carrier organic anion transporter family member. (724 aa)    
Predicted Functional Partners:
EFCAB9
EF-hand calcium binding domain 9.
   
 
 0.819
CATSPER4
Cation channel sperm associated 4.
    
 
 0.775
CATSPER3
Cation channel sperm associated 3.
    
   0.765
CATSPER2
Cation channel sperm associated 2.
    
   0.765
TMEM262
Transmembrane protein 262.
   
   0.765
SYNJ2BP
Synaptojanin 2 binding protein.
    
   0.641
SLC16A2
Solute carrier family 16 member 2.
   
 
 0.490
SLC16A10
Solute carrier family 16 member 10.
   
 
 0.490
CDH1
Cadherin 1; Cadherins are calcium-dependent cell adhesion proteins.
   
  
 0.463
RTKN
Rhotekin.
      
 0.461
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.