Diablo protein (Ictidomys tridecemlineatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Diablo

Uncharacterized protein. (234 aa)

Predicted Functional Partners:

BIRC6

0.998

XIAP

0.995

BIRC5

0.987

BIRC3

0.979

Birc2

0.961

ENSSTOP00000030003

0.961

APAF1

0.946

BIRC7

0.938

Naip

0.907

MYLIP

0.861

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APAF1	BIRC3	ENSSTOP00000019918	ENSSTOP00000005131	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	Baculoviral IAP repeat containing 3.	0.799
APAF1	BIRC5	ENSSTOP00000019918	ENSSTOP00000021309	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	Baculoviral IAP repeat containing 5.	0.780
APAF1	BIRC6	ENSSTOP00000019918	ENSSTOP00000019639	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	Baculoviral IAP repeat containing 6.	0.988
APAF1	BIRC7	ENSSTOP00000019918	ENSSTOP00000029619	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	Baculoviral IAP repeat containing 7.	0.775
APAF1	Birc2	ENSSTOP00000019918	ENSSTOP00000005140	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	Uncharacterized protein.	0.780
APAF1	Diablo	ENSSTOP00000019918	ENSSTOP00000013370	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	Uncharacterized protein.	0.946
APAF1	ENSSTOP00000030003	ENSSTOP00000019918	ENSSTOP00000030003	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	Uncharacterized protein.	0.780
APAF1	MYLIP	ENSSTOP00000019918	ENSSTOP00000011486	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	Myosin regulatory light chain interacting protein.	0.767
APAF1	Naip	ENSSTOP00000019918	ENSSTOP00000015128	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	NACHT domain-containing protein.	0.775
APAF1	XIAP	ENSSTOP00000019918	ENSSTOP00000003146	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	X-linked inhibitor of apoptosis.	0.929
BIRC3	APAF1	ENSSTOP00000005131	ENSSTOP00000019918	Baculoviral IAP repeat containing 3.	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	0.799
BIRC3	BIRC5	ENSSTOP00000005131	ENSSTOP00000021309	Baculoviral IAP repeat containing 3.	Baculoviral IAP repeat containing 5.	0.900
BIRC3	BIRC6	ENSSTOP00000005131	ENSSTOP00000019639	Baculoviral IAP repeat containing 3.	Baculoviral IAP repeat containing 6.	0.576
BIRC3	BIRC7	ENSSTOP00000005131	ENSSTOP00000029619	Baculoviral IAP repeat containing 3.	Baculoviral IAP repeat containing 7.	0.922
BIRC3	Birc2	ENSSTOP00000005131	ENSSTOP00000005140	Baculoviral IAP repeat containing 3.	Uncharacterized protein.	0.875
BIRC3	Diablo	ENSSTOP00000005131	ENSSTOP00000013370	Baculoviral IAP repeat containing 3.	Uncharacterized protein.	0.979
BIRC3	ENSSTOP00000030003	ENSSTOP00000005131	ENSSTOP00000030003	Baculoviral IAP repeat containing 3.	Uncharacterized protein.	0.876
BIRC3	Naip	ENSSTOP00000005131	ENSSTOP00000015128	Baculoviral IAP repeat containing 3.	NACHT domain-containing protein.	0.737
BIRC3	XIAP	ENSSTOP00000005131	ENSSTOP00000003146	Baculoviral IAP repeat containing 3.	X-linked inhibitor of apoptosis.	0.939
BIRC5	APAF1	ENSSTOP00000021309	ENSSTOP00000019918	Baculoviral IAP repeat containing 5.	Apoptotic protease-activating factor 1; Oligomeric Apaf-1 mediates the cytochrome c-dependent autocatalytic activation of pro-caspase-9 (Apaf-3), leading to the activation of caspase-3 and apoptosis. This activation requires ATP.	0.780