I3MSB4_ICTTR protein (Ictidomys tridecemlineatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I3MSB4_ICTTR

Uncharacterized protein. (275 aa)

Predicted Functional Partners:

LRMP

0.507

TSPAN6

0.493

AVIL

0.447

LTC4S

0.439

ALOX5AP

0.410

Your Current Organism:

Ictidomys tridecemlineatus

NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALOX5AP	I3MSB4_ICTTR	ENSSTOP00000009791	ENSSTOP00000015009	Arachidonate 5-lipoxygenase activating protein.	Uncharacterized protein.	0.410
ALOX5AP	LTC4S	ENSSTOP00000009791	ENSSTOP00000020382	Arachidonate 5-lipoxygenase activating protein.	Leukotriene C4 synthase.	0.780
AVIL	I3MSB4_ICTTR	ENSSTOP00000001043	ENSSTOP00000015009	Advillin.	Uncharacterized protein.	0.447
I3MSB4_ICTTR	ALOX5AP	ENSSTOP00000015009	ENSSTOP00000009791	Uncharacterized protein.	Arachidonate 5-lipoxygenase activating protein.	0.410
I3MSB4_ICTTR	AVIL	ENSSTOP00000015009	ENSSTOP00000001043	Uncharacterized protein.	Advillin.	0.447
I3MSB4_ICTTR	LRMP	ENSSTOP00000015009	ENSSTOP00000020561	Uncharacterized protein.	Lymphoid restricted membrane protein.	0.507
I3MSB4_ICTTR	LTC4S	ENSSTOP00000015009	ENSSTOP00000020382	Uncharacterized protein.	Leukotriene C4 synthase.	0.439
I3MSB4_ICTTR	TSPAN6	ENSSTOP00000015009	ENSSTOP00000031413	Uncharacterized protein.	Tetraspanin.	0.493
LRMP	I3MSB4_ICTTR	ENSSTOP00000020561	ENSSTOP00000015009	Lymphoid restricted membrane protein.	Uncharacterized protein.	0.507
LTC4S	ALOX5AP	ENSSTOP00000020382	ENSSTOP00000009791	Leukotriene C4 synthase.	Arachidonate 5-lipoxygenase activating protein.	0.780
LTC4S	I3MSB4_ICTTR	ENSSTOP00000020382	ENSSTOP00000015009	Leukotriene C4 synthase.	Uncharacterized protein.	0.439
TSPAN6	I3MSB4_ICTTR	ENSSTOP00000031413	ENSSTOP00000015009	Tetraspanin.	Uncharacterized protein.	0.493