STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101962232Uncharacterized protein. (1720 aa)    
Predicted Functional Partners:
ABCA3
ATP binding cassette subfamily A member 3.
  
  
 
0.764
ENSSTOP00000030481
ABC transporter domain-containing protein.
  
 
0.598
ABCA4
ATP binding cassette subfamily A member 4.
    
0.588
LOC101959085
Cytochrome c oxidase assembly homolog COX15.
    
 0.570
APOA1
Apolipoprotein A1.
    
 0.569
APOA4
Apolipoprotein A4.
    
 0.569
LOC101976331
Uncharacterized protein.
  
  
 
0.546
LOC101976043
Uncharacterized protein.
  
  
 
0.544
ABCA1
ATP binding cassette subfamily A member 1.
  
 
0.543
GBE1
1,4-alpha-glucan branching enzyme 1.
   
 
  0.541
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.