STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101961563Uncharacterized protein. (166 aa)    
Predicted Functional Partners:
CAMP
Cathelicidin antimicrobial peptide.
   
 
 
0.994
S100A9
S100 calcium binding protein A9; Belongs to the S-100 family.
   
 
 0.631
S100A12
Protein S100; Belongs to the S-100 family.
   
 
 0.631
S100A8
Protein S100; Belongs to the S-100 family.
   
 
  0.521
GKN3P
Gastrokine 3, pseudogene.
  
     0.469
LTF
Lactotransferrin; Belongs to the transferrin family.
   
    0.454
LAT
Linker for activation of T cells.
      
 0.420
Your Current Organism:
Ictidomys tridecemlineatus
NCBI taxonomy Id: 43179
Other names: Citellus tridecemlineatus, I. tridecemlineatus, Spermophilus tridecemlineatus, thirteen-lined ground squirrel
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.